The Ministry of the Environment in Ecuador regulates zoos in the country by overseeing processes and facilities. It also keeps tabs on the state of different species and rescues animals in illegal animal trafficking. Amaru Bio Park Zoo of Cuenca is governed by this environmental authority.

The Committee of Environmental Management in Cuenca allows for annual zoo operations to occur. It also makes records of the species that arrive to Amaru Zoo and has funded projects of amphibian conservation in the city and in Cajas National Park.

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